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SCI2S Publications (C. del Val)

Number of Results: 59

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2017 (1)

  • [2274] C. del Val, Bondar AN. Charged groups at binding interfaces of the PsbO subunit of photosystem II: A combined bioinformatics and simulation study. Journal: Biochimica et Biophysica Acta (BBA) - Bioenergetics. 2017 Jun;1858(6):432-441. doi: 10.1016/j.bbabio.2017.03.004


2015 (4)

  • [2264] J. Arnedo, DM. Svrakic , C. del Val, R. Romero Zaliz, H. Hernández-Cuervo; Molecular Genetics of Schizophrenia Consortium., AH. Fanous, MT. Pato, CN. Pato, GA. de Erausquin, CR. Cloninger, I. Zwir. Uncovering the hidden risk architecture of the schizophrenias: confirmation in three independent genome-wide association studies. Journal: American Journal of Psychiatry. 2015 Feb 1;172(2):139-53. doi: 10.1176/appi.ajp.2014.14040435
  • [2266] Das A, V. Bellofatto, J. Rosenfeld, M. Carrington , R. Romero Zaliz, C. del Val, AM. Estévez. High throughput sequencing analysis of Trypanosoma brucei DRBD3/PTB1-bound mRNAs. Journal:Molecular and Biochemical Parasitology. 2015 Jan-Feb;199(1-2):1-4. doi: 10.1016/j.molbiopara.2015.02.003
  • [2269] Cournia,TW.Allen, I. Andricioaei, B.Antonny, D. Baum, G. Brannigan,NV.Buchete,JT. Deckman, L.Delemotte,C. del Val,R. Friedman, P.Gkeka,HC. Hege, J. Hénin,MA. Kasimova,A. Kolocouris,ML. Klein,S. Khalid. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. Journal:Journal of Membrane Biology. 2015 Aug;248(4):611-40. doi: 10.1007/s00232-015-9802-0 PDF Icon
  • [2272] DC. Garcia-Ramon, MJ. Luque-Navas, CA. Molina, C. del Val, A: Osuna, S. Vilchez. Identification, sequencing and comparative analysis of pBp15.S plasmid from the newly described entomopathogen Bacillus pumilus 15.1. Journal:Plasmid. 2015 Nov;82:17-27. doi: 10.1016/j.plasmid.2015.09.001


2014 (2)


2013 (3)

  • [1692] J. Arnedo, C. del Val, G.A. de Erausquin, R. Romero Zaliz, D. Svrakic, C.R. Cloninger, I. Zwir. PGMRA: a web server for (phenotype × genotype) many-to-many relation analysis in GWAS. Nucleic Acids Research 41:W1 (2013) W142-W149. doi: 10.1093/nar/gkt496
  • [1717] C. del Val, J. Royuela-Flor, S. Milenkovic, AN. Bondar. Channelrhodopsins: A bioinformatics perspective. Biochim Biophys Acta (2013) pii: S0005-2728(13)00190-4. doi: 10.1016/j.bbabio.2013.11.005
  • [2296] J.R. Campaña Gómez, C. Cano Gutiérrez, C. Cruz Coronas, C. del Val, J.M. Fernández Luna, M.A. Rubio Escudero, M.D. Ruiz Jiménez. DEVELOPMENT OF AUTONOMOUS LEARNING TOOLS TO ENHANCE STUDENTS LEARNING IN SCIENCE AND ENGINEERING. J.R. Campaña Gómez, C. Cano Gutiérrez, C. Cruz Coronas, C. del Val Muñoz, J.M. Fernández Luna, M.A. Rubio Escudero, M.D. Ruiz Jiménez (2013) DEVELOPMENT OF AUTONOMOUS LEARNING TOOLS TO ENHANCE STUDENTS LEARNING IN SCIENCE AND ENGINEERING, EDULEARN13 Proceedings, pp. 5134-5143.. PDF Icon BibTex Icon


2012 (3)

  • [1473] C. del Val, R. Romero Zaliz,O. Torres-Quesada, A. Peregrina, N. Toro, J.I. Jimenez-Zurdo. A survey of sRNA families in α-proteobacteria. RNA Biology 9:2 (2012) 119-129. doi: 10.4161/rna.18643 PDF Icon
  • [1568] C. del Val, S. White, A. N. Bondar. Ser/Thr motifs in transmembrane proteins:Conservation patterns and effects on local protein structure and dynamics. Journal of Membrane Biology, 245 (2012) 717-730. doi: 10.1007/s00232-012-9452-4 PDF Icon
  • [1569] M. Nack, I. Radu, B. J. Schultz, T. Resler, R. Schlesinger, A. N. Bondar, C. del Val, S. Abbruzzetti, C. Viappiani, C. Bamann, E. Bamberg, J. Heberle. Kinetics of proton release and uptake by channelrhodopsin-2. FEBS Letters 586 (2012) 1344–1348. doi: 10.1016/j.febslet.2012.03.047 PDF Icon


2011 (4)

  • [1475] R. Romero Zaliz, J. Arnedo, I. Zwir, C. del Val. Finding promoter profiles with multiobjective identification of cis-regulatory modules based on constrains. 11th international conference on intelligent systems design and applications (ISDA 2011), Córdoba (Spain), pp. 1218- 1223, 22–24 November 2011. PDF Icon
  • [1477] O. Harari, C. del Val, I. Zwir. Integrating network motifs into a genetc network:a case of study based on the PhoP/phoQ two component system. 11th international conference on intelligent systems design and applications (ISDA 2011), Córdoba (Spain), pp. 1371-1376, 22–24 November 2011. PDF Icon
  • [2287] R. Romero Zaliz, J. Arnedo, V Dueñas, P. Villar, M.J. del Jesús, J. Cortés, I. Zwir, C. del Val. Desarrollo de una página web para el aprendizaje interactivo del lenguaje de programación R. Congreso Internacional de Innovación Docente, Cartagena, Murcia, Región de Murcia, España, 2011.
  • [2293] J. Arnedo, R. Romero Zaliz, I. Zwir, C. del Val. A Multi-objective approach for the prediction of bacterial sRNAs. 19th Annual International Conference on Intelligent Systems For Molecular Biology and 10th European Conference on Computational Biology, Viena, Austria, 2011.


2010 (12)

  • [1170] C. del Val, O. Pelz, K.H. Glatting, E. Barta and A. Hotz-Wagenblatt. PromoterSweep: a tool for identification of transcription factor binding sites. Theoretical Chemical Accounts 125 (2010) 583-591. doi: 10.1007/s00214-009-0643-8 PDF Icon
  • [1171] J. Soza-Ried, A.Hotz-Wagenblatt, KH. Glatting, C. del Val, K. Fellenberg, H. Bode, U. Frank, J. Hoheisel, M. Frohme. The transcriptome of the colonial marine hydroid Hydractinia echinata. FEBS Journal FEBS J. 2010 Jan;277(1):197-209. PDF Icon
  • [1172] R. Romero Zaliz, C. Rubio-Escudero, I. Zwir, C. del Val. Optimization of Multi-classifiers for Computational Biology: Application to gene finding and gene expression. Theoretical Chemical Accounts, 125(3-6), 599-611. doi: 10.1007/s00214-009-0648-3 PDF Icon
  • [1173] S. Kogenaru, C. del Val, A. Hotz-Wagenblatt, K-H Glatting. TissueDistributionDBs: a repository of organism-specific tissue-distribution profiles. Theoretical Chemical Accounts. doi: 10.1007/s00214-009-0670-5 PDF Icon
  • [1331] R. Romero Zaliz,M. Martínez-Ballesteros, I. Zwir, C. del Val. Multiobjective identification of cis regulatory modules based on constraints. XV Congreso Español sobre Tecnologías y Lógica Fuzzy (ESTYLF 2010), Huelva (Spain), 471-475, 3-5 February 2010. PDF Icon
  • [1332] R. Romero Zaliz, C. del Val, I. Zwir. Optimization of multi classifiers using a fuzzy logic approach: an application to the gene prediction problem. XV Congreso Español sobre Tecnologías y Lógica Fuzzy (ESTYLF 2010), Huelva (Spain), 477-481, 3-5 February 2010. PDF Icon
  • [1333] R. Romero Zaliz, I. Zwir, C. del Val. Mejora de la predicción de genes utilizando un algoritmo de programación genética. VII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2010), pp. 413-420, Valencia (España), 7-10 Septiembre 2010.
  • [1334] J. Arnedo, R. Romero Zaliz, Luis Miguel Merino, C. del Val. Mejora de la predicción de ARNs no codificadores de proteínas (ncRNA/sRNA) mediante agregación de métodos con optimización multiobjetivo. VII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2010), pp. 445-452, Valencia (España), 7-10 Septiembre 2010.
  • [1335] R. Romero Zaliz, C. Rubio-Escudero, I. Zwir, C. del Val. Optimization of Multi-classifiers for Computational Biology: Application to gene finding and gene expression. Xth Spanish Symposium on Bioinformatics (JBI2010), October 27-29, pp. 44-45, Torremolinos-Málaga, Spain.
  • [1353] Bondar AN, C. del Val, Freites JA, Tobias DJ, White SH. Dynamics of SecY translocons with translocation-defective mutations. Structure 2010 18(7):847-57. PDF Icon
  • [1354] C. del Val, O. Pelz, K.H. Glatting, E. Barta, A. Hotz-Wagenblatt. PromoterSweep: a tool for the identification of transcription factor binding sites. Xth Spanish Symposium on Bioinformatics (JBI2010), October 27-29, pp. 100-101, Torremolinos-Málaga, Spain..
  • [2286] J. Arnedo, R. Romero Zaliz, I. Zwir, C. del Val. Multi-objective strategy for the prediction of bacterial sRNAs. X Jornadas de Bioinformatica, Torremolinos, Malaga, Andalucia, Spain, 2010.


2009 (5)

  • [1026] R. Romero Zaliz, C. del Val, I. Zwir. ONTO-CC: Un servidor web para la anotacion automatica de genes utilizando gene ontology. pp. 539-546, In Proceedings Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB'09), Malaga (Spain). PDF Icon
  • [1166] C. Previti, O. Harari, I. Zwir, C. del Val. Profile analysis and prediction of tissue-specific CPG island methylation classes. BMC Bioinformatics 10:116 (2009). doi: 10.1186/1471-2105-10-116 PDF Icon
  • [1167] N. Bondar, C. del Val, S. H. White. Rhomboid protease dynamics and lipid interactions. Structure 17:3 (2009) 395-405. doi: 10.1016/j.str.2008.12.017 PDF Icon
  • [1169] O. Harari, C. del Val, R. Romero Zaliz, D. Shin, H. Huang, E. A. Groisman, I. Zwir. Identifying promoter features of co-regulated genes with similar network motifs. BMC Bioinformatics 10:4-S1. doi: 10.1186/1471-2105-10-S4-S1 PDF Icon
  • [1198] R. Romero Zaliz, C. del Val, I. Zwir. Optimization of Multi-classifiers for Computational Biology: Application to the Gene Finding Problem. pp. 1233-1238, ISDA 2009, November 30 - December 2, 2009, Pisa.


2008 (3)

  • [0852] R. Romero Zaliz, C. del Val, J.P. Cobb, I. Zwir. Onto-CC: a web server for identifying Gene Ontology conceptual clusters. Nucleid Acids Research, 36(Web Server issue):W352-W357. doi: 10.1093/nar/gkn323 PDF Icon
  • [0895] A. Vivas, B. Moreno, C. del Val, C. Macci, G. Masciandaro, E. Benitez. Metabolic and bacterial diversity in soils historically contaminated by heavy metals and hydrocarbons. Journal of Environmental Monitoring 10:11 (2008) 1287-1296. doi: 10.1039/b808567f PDF Icon
  • [1168] O. Harari, C. del Val, D. Shin, H. Huang, and E. A. Groisman, I. Zwir. Extracting promoter features from genomic datasets:towards an annotation of genome regulatory regions. BIBM08 IEEE international Conference on Bioinformatics and Biomedicine.


2007 (3)

  • [0757] C. del Val, E. Rivas,Omar Torres-Quesada, Nicolás Toro and José I. Jiménez-Zurdo. Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. Molecular Microbiology 66:5 (2007) 1080–1091. doi: 10.1111/j.1365-2958.2007.05978.x PDF Icon
  • [0670] C. del Val, P. Ernst , M. Falkenhahn, C. Fladerer, K.H. Glatting, S. Suhai, A. Hotz-Wagenblatt. ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. Nucleic Acids Research (2007) 35(Web Server issue):W444-W450;. doi: 10.1093/nar/gkm364 PDF Icon
  • [0732] C. Previti, O. Harari, C. del Val. Mining and Predicting CpG islands. Proceedings of the 2007 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2007), London (UK), 1216-1221, 23-26 July 2007. PDF Icon


2006 (10)

  • [0505] A. Mehrle, H. Rosenfelder, I. Schupp, C. del Val, D. Arlt, F. Hahne, S. Bechtel, J. Simpson, O. Hofman, W. Hide , K.-H. Glatting, W. Huber, R. Pepperkok, A. Poustka, S. Wiemann. The LIFEdb database in 2006. Nucleic Acid Research Database Issue 34 (2006) D415-D418. doi: 10.1093/nar/gkj139 PDF Icon
  • [0541] R. Romero Zaliz, C. Rubio-Escudero, O. Cordón, O. Harari, C. del Val, I. Zwir. Mining Structural Databases: An Evolutionary Multi-Objective Conceptual Clustering Methodology. Proceedings of the Fourth European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics (EvoBIO2006), Budapest (Hungary), Lecture Notes in Computer Science 3907, 159-171, April 2006. PDF Icon
  • [0542] C. Rubio-Escudero, R. Romero Zaliz, O. Cordón, O. Harari, C. del Val, I. Zwir. Optimal Selection of Microarray Analysis Methods using a Conceptual Clustering Algorithm. Proceedings of the Fourth European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics (EvoBIO2006), Budapest (Hungary), Lecture Notes in Computer Science 3907, 172-183, April 2006. PDF Icon
  • [0582] A. Vinayagam, C. del Val, R. König, K.-H. Glatting, R. Eils. GOPET: a tool for automatic Gene Ontology term prediction. BMC BIoinformatics 7 (2006) 161-167. doi: 10.1186/1471-2105-7-161 PDF Icon
  • [0600] C. del Val, V.Y. Kuryshev, K.H. Glatting, P. Ernst, A. Hotz-Wagenblatt, A. Poustka, S. Suhai, S. Wiemann. CAFTAN: a tool for fast mapping, and quality assessment of cDNAs. BMC Bioinformatics 7 (2006) 473-487. doi: 10.1186/1471-2105-7-473 PDF Icon
  • [0601] F.A. Giordano, B. Fehse, A. Hotz-Wagenblatt, S. Jonnakuty, C. del Val, J.U. Appelt, K.Z. Nagy, K. Kuehlcke, S. Naundorf, A.R. Zander, W.J. Zeller, A.D. Ho, S. Fruehauf, S. Laufs. Retroviral vector insertions in T-lymphocytes used for suicide gene therapy occur in gene groups with specific molecular functions. Bone Marrow Transplantation 38:3 (2006) 229-235. doi: 10.1038/sj.bmt.1705424 PDF Icon
  • [0602] S. Laufs, G. Guenechea, A. Gonzalez-Murillo, K.Z. Nagy, M.L. Lozano, C. del Val, S. Jonnakuty, A. Hotz-Wagenblatt, W.J. Zeller, J.A. Bueren et al. Lentiviral vector integration sites in human NOD/SCID repopulating cells. Journal of Gene Medicine 8(10) (2006) 1197-1207. doi: 10.1002/jgm.958 PDF Icon
  • [0622] C. Rubio-Escudero, C. del Val, O. Cordón, I. Zwir. Decision Making Association Rules for Recognition of Differential Gene Expression Profiles. Proceedings of the 7th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL06). Lecture Notes in Computer Science 4224, Springer-Verlag 2006, Burgos (Spain) 1137-1149, September 2006. PDF Icon
  • [0625] O. Harari, C. del Val, I. Zwir. Fusing genetic knowledge by dynamic learning regulatory profiles: visualizing the strategy. Proceedings of the I International Conference on Multidisciplinary Information Sciences & Technologies (INSCIT 2006), Mérida (Spain), Volumen II, 47-51, October 2006. PDF Icon
  • [0627] D. Hose, J. De Vos, C. Ittrich, J.F. Rossi, T. Reme, A. Benner, K. Mahtouk, C. del Val, A. Hotz-Wagenblatt, J. Moreaux. A molecular classification of multiple myeloma (MM) based on gene expression profiling and fluorescence in situ hybridisation as independent prognostic factor for event free survival (EFS). Proceedings of the Second International Congress on Molecular Staging of Cancer, European Journal of Cancer Supplements 4(6) 34-35 (2006) . PDF Icon


2005 (1)

  • [0626] D. Hose , J.F. Rossi, C. Ittrich , J. De Vos , T. Reme, A. Benner, K.N. Mahtouk, C. del Val, J. Moreaux, A. Hotz-Wagenblatt. Molecular classification of multiple myeloma (MM) based on gene expression profiling (GEP) and fluorescence in situ hybridisation (FISH) is an independent predictor for event free survival (EFS). Blood 2005, 106(11):151A-152A..


2004 (2)

  • [0480] C. del Val, A. Mehrle, M. Falkenhahn, M. Séller, KH Glatting, A. Poustka, S. Suhai, S. Wiemann. High-troughput protein analysis integrating bioinformatics and experimental assays. Nucleic Acid Research 32:2 (2004) 742-748. doi: 10.1093/nar/gkh257 PDF Icon
  • [0628] F.W. Cremer, J. De Vos, D. Hose, J.F. Rossi, C. Ittrich, T. Reme, A. Benner, E. Jourdan, M.S. Raab, J. Bila, C. del Val. Multiple myeloma: Global expression profiling (GEP) indicates upregulation of the ribosomal machinery in hyperdiploid clones. Blood 2004, 104(11):398A-398A.


2003 (1)

  • [0481] C. del Val, K-H Glatting, P. Ernst, S. Suhai. cDNA2Genome a tool for the mapping and annotation of cDNAs. BMC Bioinformatics 4:39 (2003) 1-8. PDF Icon


2002 (2)

  • [0482] C. del Val, P. Ernst, R. Bräuning, K-H Glatting, S. Suhai. PATH: a task for the inference of phylogenies. Bioinformatics 18 (2002) 646-647. PDF Icon
  • [0483] C. Leyval, E. J. Joner, C. del Val, K. Haselwandter. Potential of arbuscular mycorrhizal fungi for bioremediation. In: Gianinazzi, S., Schüepp, H., Barea, J.M., Haselwandter (Eds.): Mycorrhiza Technology in Agriculture. Birkhäuser Verlag 2002. PDF Icon


1999 (3)

  • [0484] C. del Val, J.M. Barea, C. Azcón-Aguilar. Diversity of Arbuscular Mycorrhizal Fungal populations in heavy metal contaminated soils. Applied Environmental Microbiology 65 (1999) 718-723. PDF Icon
  • [0485] C. del Val, J.M. Barea, C. Azcón-Aguilar. Assessing the tolerance to heavy metals of arbuscular mycorrhizal fungi isolated from sewage-sludge contaminated soils. Applied Soil Ecology 11 (1999) 261- 269. PDF Icon
  • [0486] J.M. Barea, E. Pérez Solis, C. del Val, C. Azcón-Aguilar. Importancia de las micorrizas en el establecimiento y protección de las plantas en suelos degradados. Phytoma 111 (1999) 18-30.